Tuesday, 19 February 2008

2005_09_01_archive



Little Piggies of Urodeles

A recent set of exchanges between myself and a friend brought me upon

this Answers in Genesis article. In it, Jonathan Sarfati (an

acid-tongued spokesperson for AiG) claims that the digit development

of frogs is completely different from that of all other tetrapods. In

it, he claims, frogs grow their digits from developing buds. PZ Myers

responded to Sarfati's claims about bird/dinosaur digit homology and

amphibian digit development.

A minor correction is worth publishing. In the article Myers states:

We've got a pretty good handle on the outline of limb development

in multiple tetrapod lineages now, and they all use the same tools.

Contrary to Sarfati's implication, they all have apical ectodermal

ridges (with some rare exceptions in a few highly derived,

direct-developing frogs) and zones of polarizing activity, they all

use the same set of molecules, including FGF-4 and FGF-8 and the

same Hox genes and retinoic acid and BMPs. If there's one thing we

know, it's that limb development is dazzlingly well conserved.

Despite the fact that I think most of Myers's article is a wonderful

vulgarization of limb development, this last part is an overstatement.

It is true that many aspects of limb and digit development in

tetrapods is remarkably well conserved throughout tetrapods, but it is

not true that all tetrapods have an AER, it is also not true that they

all use apoptosis to create the interdigital spaces. All salamanders

that have so far been studied grow their digits from buds and lack an

AER, much like Sarfati explained for frogs (only Sarfati attributes it

to the wrong animal). Apoptosis has only been detected in the

developing digits of one salamander Desmognathus and its role in limb

development is not clear (Franssen et al. 2005). It is also the case

that salamanders begin digit development with digit 2, which is also

in stark contrast with the majority of other tetrapods which develop

digit 4 first. This is an interesting and perplexing problem for

developmental biologists.

So does this mean that Sarfati is right? Does this mean that the limbs

of salamanders cannot be homolgous to those of other tetrapods? The

problem comes from this statement by Sarfati which exemplifies a

rather deep ignorance of developmental biology (and I'm not even an

expert!):

If the birds evolved from dinosaurs, then one would expect common

genes. These in turn would code for a common development in the

embryo.

This is both overly simplistic and fallacious, since we already know

that most of the "genetic toolkit" for animal development is highly

conserved. The fact is, the same genes are used in nearly all

tetrapods. In fact, vast numbers of the same genes are involved in

similar processes in all animals. Some genes have been duplicated and

modified to produce different functions -- which is precisely how

animal form evolves!

As Myers points out beautifully, and what is the most important point

here, is that the patterning mechanisms are conserved. We know that

developing tetrapod limbs use a special hierarchical pattern of Hox

genes that lay out the "construction zones" in a developing embryo. We

see remarkable conservation in both the Hox genes and the placement of

special region known as the zone of polarizing activity (ZPA) which

plays a role in setting up anterior-posterior polarity of the

developing limb.

The emerging picture of salamander limb development is that there are

a striking number of "mechanical" differences in the way the

construction takes place. The order of digit development and many of

the processes that make the digit protrusions are different. However,

what doesn't appear to have changed, is precisely what we would expect

if the digits are homologous: the genes that control the identity of

the digits.

Animal development doesn't work in the same way as humans construct

buildings. It's not as logical as we would think it is. In fact, it's

rather perplexing and enigmatic and often proceeds along seemingly

very illogical courses. The process of making a digit (as in, a

protrusion of the distal part of a limb) is under different controls

from the process that says what those digits are (the thumb vs.

forefinger, etc.). Sarfati's oversimplification is academically

irresponsible. It is flat-out wrong making the entire thesis of his

argument baseless.

_________________________________________________________________

Franssen, R.A., Marks, S., Wake, D. and Shubin, N. 2005. Limb

chondrogenesis of the seepage salamander (Desmognathus aenus(Amphibia:

Plethodontidae). Journal of Morphology 265:87-101

posted by Martin Brazeau at 3:57 PM 0 comments links to this post

Museums respond to creationists

The New York Times has an excellent article on what museums are now

doing to combat rabid creationists. It starts with an appropriate

anecdote that points out how most creationists that one is likely to

encounter are not willing to learn. They ask questions hoping you

won't have an answer, they're not looking for an answer:

ITHACA, N.Y. - Lenore Durkee, a retired biology professor, was

volunteering as a docent at the Museum of the Earth here when she

was confronted by a group of seven or eight people, creationists

eager to challenge the museum exhibitions on evolution ... their

queries coming so thick and fast that she found it hard to reply.

That being said, Dr. Warren Allmon of the Museum of the Earth, made

this important distinction:

There is more than one type of creationist, he said: "thinking

creationists who want to know answers, and they are willing to

listen, even if they go away unconvinced" and "people who for

whatever reason are here to bother you, to trap you, to bludgeon

you."

One must remember, that the public face of creationism comes from

people like Kent Hovind, Ken Ham, Duane Gish, and that rabid troll in

the internet forum that just read a couple of pamphelets by these

savants of Science and Scripture. However, many folks out there want

to know and want to understand. The best we can do is provide the best

possible resources for people who want to learn.

Keep on bloggin'!

posted by Martin Brazeau at 11:13 AM 0 comments links to this post

Welcome to The Lancelet!

Add one more biology blog to the list, here comes The Lancelet! Here

you'll find the random musings and deluded ramblings of a

palaeontology graduate student.

Why "The Lancelet"? This is the common name for an animal sometimes

known as Amphioxus (Branchiostoma) - a primitive chordate that has

long functioned as a living archetype for the ancestor of all

vertebrates... maybe that will be a post for later this week: the

history of The Lancelet... but I'm sure there are a number of those on

the web.

Books I'm reading:

The Vertebrate Body by A.S. Romer and T. Parsons. Because I never

received any formal training in anatomy while I was an undergraduate,

I now have to spend my time teaching these important lessons to

myself.

From DNA to Diversity S. Carroll et al. Because, when one reads about

anatomy they want to know "how the hell did this evolve!?" Carroll and

co-authors have bring the complex answers to this question down to

lowly wannabe anatomist like me. I recommend it for anyone with a


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